Open-source tool

Bead Analyzer

Fast, accurate, and reproducible 3D PSF characterization from fluorescent bead images.

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What it does

3D PSF measurement

Characterize the point spread function of your microscope from sub-resolution fluorescent bead images — widefield, confocal, lightsheet, and more.

AI bead detection

Automated bead finding using AI-powered detection — no manual selection required. Works reliably even in crowded or noisy fields.

Reproducible output

Exports measured PSFs in standard formats compatible with Arnas Scope, ImageJ/Fiji, and other deconvolution tools. Full parameter logs for reproducibility.

Free and open source

Source code, documentation, and example datasets on GitHub.

Open on GitHub