From microscopy to insights
We build AI-enabled products and workflows for big data microscopy, lightsheet imaging, and omics — helping scientists achieve impactful, publishable results.
Our flagship product
Arnas Scope
A next-generation deconvolution suite for fluorescence microscopy, built by Nathan J O'Connor — one of the original creators of AutoQuant AutoDeblur. Available as a standalone Windows GUI, CLI, and SDK/DLL.
Restore resolution. Reveal biology. Built on two decades of algorithmic advances and a completely redesigned interface.
Learn about Arnas Scope
What we do
Scientific innovation when you need it
We specialize in building products and workflows for big data microscopy, lightsheet microscopy, and omics — streamlining imaging pipelines and supporting reproducible, scalable research.
Advanced Image Processing & Analysis
We specialize in microscopy data analysis, utilizing AI-enabled pipelines to remove artifacts, perform deconvolution, and extract quantitative insights from complex imaging data.
AI & Machine Learning for Bioimaging
Custom AI models for cell detection and segmentation. We design, train, and validate bespoke solutions — including fine-tuned Cellpose and StarDist models — tailored to your imaging needs.
Big Data Management & Strategy
Strategic consulting on modern data storage formats like OME-Zarr and compression strategies such as JPEG 2000, balancing image fidelity with data size at scale.
Scientific & Software Management Consulting
Over 25 years of experience leading complex scientific technologies from concept to market — product management, grant leadership (SBIR/NIH/DARPA), and commercialization strategy.
Founded by
Nathan J. O'Connor, PhD, MS
Nathan founded Arnas Technologies with over three decades of experience in microscopy, physiology, and neuroscientific research. He has built technologies for live imaging experiments, HTS/HCS screening, and AI-assisted neuroscience research.
He helped lead AutoQuant Imaging — the company behind the industry-standard AutoDeblur deconvolution software — and has managed multiple SBIR NIH and DARPA grants.
Ecosystem
Partners & collaborators
MBF Bioscience
A deep, long-standing strategic relationship with this industry leader in scientific imaging and neuroinformatics software for neuroscience and whole slide imaging.
ScientiaLux
Expert technical and strategic insights in AI-enabled pipelines, custom algorithm development, and microscopy data analysis.
Advanced Research Consulting
Collaboration to help companies and researchers implement advanced hardware and software solutions meeting the FAIR standard for microscopy data analysis.
Get in touch
Reach out to us
If you need custom image processing workflows for big data microscopy, lightsheet microscopy, omics, and more — we'd love to hear from you.